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Non-linear response and non-equilibrium dynamics of liquid crystals

  • I. Nishiyama, Y. Tabe, J. Yamamoto and H. Yokoyama,
    Pre-Organization Effect on Chirality, Polarity and Biaxiality in Liquid Crystals: Novel Laterally Connected Mesogens showing Anomalous Properties,
    Mol. Cryst. Liq. Cryst. 549, 174-183 (2011).

  • K. Seki, S. Ramachandran, and S. Komura,
    Diffusion coefficient of a circular inclusion in a liquid membrane supported by a solvent of arbitrary thickness,
    Phys. Rev. E 84, 021905 (10pp) (2011).

  • S. Fujii, S. Komura, Y. Ishii, and C.-Y. D. Lu,
    Elasticity of smectic liquid crystals with focal conic domains,
    J. Phys.: Condens. Matter 23, 235105 (7pp) (2011).

  • S. Ramachandran, S. Komura, K. Seki, and G. Gompper,
    Dynamics of a polymer chain confined in a membrane,
    Eur. Phys. J. E 34, 11046-3 (13pp) (2011).

  • N. Shimokawa, S. Komura, and D. Andelman,
    Charged bilayer membranes in asymmetric ionic solutions: phase diagrams and critical behavior,
    Phys. Rev. E 84, 031919 (10pp) (2011).

  • R. Anughara, F. Nugroho, T. Ueki, Y. Hidaka, S. Kai and M. I. Tribelsky,
    Link of microscopic and macroscopic fields in nematodynamics,
    Phys. Rev. E 83, 022701-1-4 (2011).

  • F. Nugroho, R. T. Ueki, Anughara, Y. Hidaka and S. Kai,
    Quantitative definition of patterns in soft-mode turbulence suppressing the Nambu-Goldstone mode,
    Phys. Rev. E 84, 011709-1-1-5(2011).

  • T. Narumi, M. Suzuki, Y. Hidaka and S. Kai,
    Size dependence and asymptotic qquation of I-V Properties in Coulomb blockade arrays,
    J. Phys. Soc. Jpn 80, 114704 -1-8 (2011).

  • T. Narumi, M. Suzuki, Y. Hidaka, T. Asai and S. Kai,
    Active Brownian motion in threshold distribution of a Coulomb blockade model,
    Phys. Rev. E 84, 051137-1-5 (2011).

  • M. Saito, M. Seto, S. Kitao, Y. Kobayashi, M. Kurokuzu, Y. Yoda, and J. Yamamoto,
    Small and Large Angle Quasi-Elastic Scattering Experiments by Using Nuclear Resonant Scattering on Typical and Amphiphilic Liquid Crystals,
    J. Phys. Soc. Jpn. 81, 023001 (2012).

  • J. Yoshioka, Y. Takanishi and J. Yamamoto,
    Dispersion relations of director fluctuations along the direction perpendicular to the helical axis in cholesteric liquid crystals (*),
    Europhys. Lett. 98, 16006 (2012).

  • S. Komura, S. Ramachandran, and M. Imai,
    Hydrodynamic effects in multicomponent fluid membranes (*),
    "Series in Soft Condensed Matter - Vol. 4 NON-EQUILIBRIUM SOFT MATTER PHYSICS"
    edited by S. Komura and T. Ohta, (197-274), World Scientific (2012).

  • S. Komura, S. Ramachandran and K. Seki,
    Anomalous lateral diffusion in a viscous membrane surrounded by viscoelastic media (*),
    Europhys. Lett. 97, 68007 (2012).

  • Y. Hirose, S. Komura, and D. Andelman,
    Concentration fluctuations and phase transitions in coupled modulated bilayers (*),
    Phys. Rev. E 86, 021916-1-13 (2012).

  • S. Komura, S. Ramachandran, K. Seki, and M. Imai,
    Dynamics of heterogeneity in fluid membranes (*) ,
    Advances in Planar Lipid Bilayers and Liposomes 16, 129-164 (2012).

  • F. Nugroho, T. Narumi, Y. Hidaka, J. Yoshitani, M. Suzuki and S. Kai,
    Glassy Dynamics in relaxation of Soft-Mode Turbulence (*),
    Phys. Rev. E 85, 030701(R) (1-5) (2012).

  • F. Nugroho, Y. Hidaka, T. Ueki and S. Kai,
    Transient Mode Selections in Soft-Mode Turbulence by Controlling the Nambu–Goldstone Modes,
    J. Phys. Soc. Jpn 81, 024004 (2012).

  • Y. Yusuf and S. Kai,
    Electro-opto-mechanical Effects in Swollen Polydomain Side Chain Liquid Crystal Elastomers,
    AIP Conference Proceedings 1454, 290-293 (2012).

  • S. Komura, S. Ramachandran, and K. Seki,
    Lateral dynamics in polymer-supported membranes (*),
    Materials 5, 1923-1932 (2012).

  • C.-Y. D. Lu, S. Komura, and K. Seki,
    Viscoelasticity of two-layer-vesicles in solution (*),
    Phys. Rev. E 86, 061401 (11pp) (2012).

  • F. Nemoto, I. Nishiyama, Y. Takanishia and J. Yamamoto,
    Anchoring and alignment in a liquid crystal cell: self-alignment of homogeneous nematic (*),
    Soft Matter, DOI: 10.1039/c2sm26501j (2012).

  • T. Narumi,J. Yoshitani, M. Suzuki, Y. Hidaka, F. Nugroho, T. Nagaya and S. Kai,
    Memory function on turbulent fluctuations in soft-mode turbulence (*),
    Phys. Rev. E 87, 012505 (2013)
    arXiv:1210.7545 (cond-matt) (2012).

  • T. Narumi, F. Nugroho, J. Yoshitani, Y. Hidaka, M. Suzuki, and S. Kai,
    Compressed Exponential Relaxation as Superposition of Dual Structure in Pattern Dynamics of Nematic Liquid Crystals (*),
    AIP Conference Proceedings 1518, 403-410 (2013).
    arXiv:1211.7163v1 (cond-matt) (2012).

  • G. Meng, T. Yanagida, M. Kanai, M. Suzuki, K. Nagashima, B. Xu, F. Zhuge, A. Klamchuen, Y. He, S. Rahong, S. Kai and T. Kawaji,
    Pressure-induced evaporation dynamics of gold nanoparticles on oxide substrate,
    Phys. Rev. E87, 012405 (2013).

  • R. Okamoto, Y. Fujitani, and S. Komura,
    Drag coefficient of a rigid spherical particle in a near-critical binary fluid mixture (*),
    submitted to J. Phys. Soc. Jpn.

  • K. Seki, S. Komura, and S. Ramachandran,
    Growth kinetics of circular liquid domains on vesicles by diffusion-controlled coalescence (*),
    submitted to J. Phys.: Condens. Mat.



Slow dynamics of colloids

  • S. Yabunaka and T. Araki,
    Domain growth and defect motion in isotropic-nematic transition in liquid crystalline polymers,
    Phys. Rev. E 83, 061711 (2011).

  • A. Onuki, R. Okamoto, and T. Araki,
    Phase Transitions in Soft Matter Induced by Selective Solvation,
    Bull. Chem. Soc. Jpn. 84, 569 (2011).

  • H. Mizuno and R. Yamamoto,
    Dynamical heterogeneity in a highly supercooled liquid: Consistent calculations of correlation length, intensity, and lifetime,
    Phys. Rev. E 84, 011506 1-11, (2011).

  • K. Kim, K. Miyazaki, and S. Saito,
    Slow dynamics, dynamic heterogeneities, and fragility of supercooled liquids confined in random media,
    J. Phys.: Condens. Matter 23, 234123 (2011).

  • A. Ikeda and K. Miyazaki,
    Thermodynamics and Structural Properties of the High Density Gaussian Core Model,
    J. Chem. Phys. 135, 024901 (9pp) (2011).

  • A. Ikeda and K. Miyazaki,
    Slow Dynamics of the High Density Gaussian Core Model,
    J. Chem. Phys. 135, 054901 (2011).

  • Y. Uematsu and T. Araki,
    Effects of strongly selective additives on volume phase transition in gels (*),
    J. Chem. Phys. 137, 024902 (2012).

  • H. Mizuno and R. Yamamoto,
    Dynamical heterogeneity in a highly supercooled liquid under a sheared situation (*),
    J. Chem. Phys. 136, 084505 1-8 (2012).

  • H. Mizuno and R. Yamamoto,
    Mechanical Responses and Stress Fluctuations of a Strongly Sheared Supercooled Liquid (*),
    Eur. Phys. J. E 35, 29 1-14 (2012).

  • R. Tatsumi and R. Yamamoto,
    Direct numerical simulation of dispersed particles in a compressible fluid (*),
    Phys. Rev. E. 85, 066704 1-6(2012).

  • T. E. Markland, J. A. Morrone, K. Miyazaki, B. J. Berne, D. R. Reichman and E. Rabani,
    Theory and simulations of quantum glass forming liquids,
    J. Chem. Phys. 136, 074511 (2012).

  • A. Ikeda and K. Miyazaki,
    Ultra-soft potential system as a mean-field model of the glass transition,
    J. Phys. Soc. Jpn. Supplement A 81, SA006 (2012).

  • T. Araki,
    Dynamic coupling between a multistable defect pattern and flow in nematic liquid crystals confined in a porous medium, (*)
    Phys. Rev. Lett. 109, 257801(2012).

  • Y. Matsuoka, H. Mizuno, and R, Yamamoto,
    Acoustic wave propagation through a supercooled liquid: A normal mode analysis, (*)
    J. Phys. Soc. Jpn. 81, 124602 (2012).

  • H. Shiba, T. Kawasaki and A. Onuki,
    Relationship between bond breakage correlations and four-point density correlations in heterogeneous glassy dynamics: Configuration changes and vibration modes,
    Phys. Rev. E 86, 041504 (2012).

  • T. Araki,
    Nonlinear flow behaviors of nematic liquid crystals in complex geometries, (*)
    AIP Conference Proceedings 1518, 398-402 (2013).

  • H. Mizuno, and R, Yamamoto,
    General constitutive model for supercooled liquids: Anomalous transverse wave propagation, (*)
    Phys. Rev. Lett. 110, 095901 (2013)

  • R. Tatsumi and R, Yamamoto,
    Propagation of hydrodynamic interactions between particles in a compressible fluid, (*)
    to appear in Phys. Fluids.

  • R. Tatsumi and R. Yamamoto,
    Velocity relaxation of a particle in a confined compressible fluid (*),
    submitted.

  • T. Araki, F. Serra and H. Tanaka,
    Defect science and engineering of liquid crystal under geometrical flustration, (*)
    submitted.



Non-equilibrium fluctuations and dynamics

  • S. Rudiuk, K. Yoshikawa and D. Baigl,
    Enhancement of DNA Compaction by Negatively Charged Nanoparticles. Application to Reversible Photocontrol of DNA Higher-Order Structure,
    Soft Matter, 7, 5854-5860 (2011).

  • S. Rudiuk, H. Saito, T. Hara, T. Inoue, K. Yoshikawa and D. Baigl,
    Light-Regulated mRNA Condensation by a Photosensitive Surfactant Works as a Series Photoswitch of Translation Activity in the Presence of Small RNAs,
    Biomacromolecules 12, 3945-3951 (2011).

  • T. Sagawa and H. Hayakawa,
    Geometrical expression of excess entropy production,
    Phys. Rev. E 84, 051110 (2011).

  • K. Saitoh and H. Hayakawa,
    Weakly nonlinear analysis of two dimensional sheared granular flow,
    Granular Matter 13, 697-711 (2011).

  • M. Otsuki and H. Hayakawa,
    Critical scaling near jamming transition for frictional granular particles,
    Phys. Rev. E 83, 051301 (2011).

  • P. Bittihn, M. Horning, and S. Luther,
    Negative curvature boundaries as wave emitting sites for the control of biological excitable media (*),
    Phys. Rev. Lett. 109, 118106 (2012).

  • S. Sasa,
    Pure glass in finite dimensions, (*)
    Phys. Rev. Lett. 109, 165702 (2012).

  • Y. Sumino, K. H. Nagai, Y. Shitaka, D. Tanaka, K. Yoshikawa, H. Chate and K. Oiwa,
    Large-scale vortex lattice emerging fromcollectively moving microtubules,
    Nature 483, 448-452 (2012).

  • M. Araki and H. Hayakawa,
    Steplike electric conduction in a classical two-dimensional electron system through a narrow constriction in a microchannel,
    Phys. Rev. B 86, 165412 (2012).

  • M. Ikeda, H. Wada and H. Hayakawa,
    Instabilities and turbulence-like dynamics in an oppositely driven binary particle mixture,
    EPL 99, 68005 (2012).

  • M. Otsuki and H. Hayakawa,
    Critical scaling of a jammed system after a quench of temperature,
    Phys. Rev. E 86, 031505 (2012).

  • M. Otsuki and H. Hayakawa,
    Rheology of Sheared Granular Particles near Jamming Transition,
    Prog. Theor. Phys. Suppl. 195, 129-138 (2012).

  • K. Kanazawa, T. Sagawa and H. Hayakawa,
    Stochastic Energetics for Non-Gaussian Processes ,
    Phys. Rev. Lett. 108, 210601 (2012).

  • N. Yoshioka and H. Hayakawa,
    Phase transition in peristaltic transport of frictionless granular particles,
    Phys. Rev. E 85, 031302 (2012).

  • T. Sano and H. Hayakawa,
    Simulation of granular jet: Is granular flow really a "perfect fluid?",
    Phys. Rev. E 86, 041308 (2012).

  • H. Kuninaka and H. Hayakawa,
    Origin of rebounds with a restitution coefficient larger than unity in nanocluster collisions,
    Phys. Rev. E 86, 051302 (2012)

  • K. Saitoh and H. Hayakawa,
    Time dependent Ginzburg-Landau equation for sheared granular flow,
    AIP. Conf. Proc. 1501, 1001 (2012)

  • T. Yuge, T. Sagawa, A. Sugita and H. Hayakawa,
    Geometrical pumping in quantum transport: Quantum master equation approach,
    Phys. Rev. B 86, 235308 (2012).

  • S. Sasa,
    Statistical mechanics of glass transition in lattice molecule models,
    J. Phys. A: Math. Theor. 45, 035002 (2012).

  • S. Sasa,
    Physics of large deviation,
    Phys. Scr. 86, 058514 (2012).

  • A. Yamamoto and M. Ichikawa,
    Direct measurement of single soft lipid nanotubes: Nanoscale information extracted in a noninvasive manner, (*)
    Phys. Rev. E 86, 061905 (2012).

  • H. Ito, M. Yanagisawa, M. Ichikawa and K. Yoshikawa,
    Emergence of a thread-like pattern with charged phospholipids on an oil/water interface, (*)
    J. Chem. Phys. 136, 204903 (2012).

  • K. Suzuki and H. Hayakawa,
    Nonequilibrium mode-coupling theory for uniformly sheared underdamped systems,
    Phys. Rev. E 87, 012304 (2013).

  • N. Nakagawa and S. Sasa,
    Work relations for time-dependent states,
    Phys. Rev. E 87, 022109 -1-5 (2013).

  • N. Nakagawa and S. Sasa,
    Work relations for time-dependent states,
    Phys. Rev. E 87, 022109 -1-5 (2013).

  • T. Kurimura, M. Takinoue, K. Yoshikawa and M. Ichikawa,
    Micro back-and-forth motion under dc electronic field, (*)
    submitted

  • S. F. Shimobayashi, T. Iwaki, T. Mori and K. Yoshikawa,
    Probability of double-strand breaks in genome-sized DNA by $\gamma$-ray decreases markedly as the DNA concentration increases, (*)
    submitted



  • Dynamics and transport of active soft matter

    • M. Tarama and T. Ohta,
      Dynamics of a deformable self-propelled particle under external forcing (*),
      Eur. Phys. J. B. 83, 391-400 (2011).

    • M. Y. Matsuo and S. Sano,
      Geometrical model of a self-propelled broken interface,
      J. Phys. A: Math. Theor. 44 285101 (2011).

    • H. Ebata and M. Sano,
      Self-replicating holes in a vertically vibrated dense suspension,
      Phys. Rev. Lett. 107, 088301 (2011).

    • K. Kawaguchi and M. Sano,
      Free energy transdution in autonomous systems,
      J. Phys. Soc. Jpn. 80, 083003 (2011).

    • S. Ito and M. Sano,
      Effects of error on fluctuations under feedback control,
      Phys. Rev. E 84, 021123 (2011).

    • K. A. Takeuchi, M. Sano, T. Sasamoto and H. Spohn,
      Growing interfaces uncover universal fluctuations behind scale invariance,
      Sci. Rep. 1, 34 (2011).

    • Y. Sakuma and M. Imai,
      Model System of Self-Reproducing Vesicles,
      Phys. Rev. Lett. 107, 198101(1-5) (2011).

    • Anne-Florence Bitbol, Nicolas Puff, Yuka Sakuma, Masayuki Imai, Jean-Baptiste Fournier and Miglena I. Angelova,
      Lipid membrane deformation in response to a local pH modification : Theory and experiments, (*)
      Soft Matter, 8, 6073-6082 (2012).

    • T. Sakaue and T. Ohta,
      Maxwell stress in fluid mixtures (*),
      Phys. Rev. Lett. 108, 078301 (2012).

    • T. Saito and T. Sakaue,
      Process time distribution of driven polymer transport (*),
      Phys. Rev. E 85, 061803 (2012).

    • T. Sakaue, T. Saito and H. Wada,
      Dragging a polymer in a viscous fluid: Steady state and transient (*),
      Phys. Rev. E 86, 011804 (2012).

    • S. Yabunaka, T. Ohta, and N. Yoshinaga,
      Self-propelled motion of a fluid droplet under chemical reaction (*),
      J. Chem. Phys. 136, 074904 (2012).

    • M. Sano, M. Y. Matsuo and T. Ohta,
      Dynamics of deformable self-propelled particles: relation with cell migration (*),
      "Series in Soft Condensed Matter - Vol. 4 NON-EQUILIBRIUM SOFT MATTER PHYSICS"
      edited by S. Komura and T. Ohta, Chapter 7 (pp365- pp415), World Scientific (2012).

    • A. Menzel and T. Ohta,
      Soft deformable self-propelled particles (*),
      Europhys. Letters 99, 58001 (2012).

    • Y. Itino and T. Ohta,
      Dynamics of Deformable Self-Propelled Particles (*),
      J. Phys. Soc. Jpn 81, 104007 (2012).

    • M. Tarama and T. Ohta,
      Spinning motion of a deformable self-propelled particle in two dimensions (*),
      J. Phys.: Cond. Matter 24, 464129 (2012)

    • 内田 就也,
      流体力学的同期現象:鞭毛や繊毛の集団運動の理解に向けて (*),
      日本物理学会誌 Vol. 67 No.11, 754-757 (2012).

    • 内田 就也,
      低レイノルズ数における流体力学的同期現象:ミニマルアプローチ (*),
      数理解析研究所講究録 Vol. 1808 , 78-87 (2012).

    • N. Uchida and R. Golestanian,
      Hydrodynamic synchronization between objects with cyclic rigid trajectories (*),
      The European Physical Journal E 35, 135 (2012).

    • M. Ueda and T. Ohta,
      Cross response in non-equilibrium systems (*),
      J. Stat. Mech. P09005 (2012).

    • T. Baba, T. Sakaue and Y. Murayama,
      Force-Fluctuation relation in a single DNA chain(*),
      Macromolecules 45, 2857 (2012).

    • M. Tarama and T. Ohta,
      Dynamics of a deformable self-propelled particle with internal rotational force (*),
      Prog. Theor. Exp. Phys. 013A01 (2013).

    • T. Murashima, M. Toda and T. Kawakatsu,
      Multiscale Simulation for Soft Matter: Application to Wormlike Micellar Solution,
      AIP Conference Proceedings 1518, 436-439 (2013).

    • C.H. Nakajima and T. Sakaue,
      Localization and size distribution of a polymer knot confined in a channel(*),
      Soft Matter, in press

    • S. Yabunaka and T. Ohta,
      Molecular orientation dynamics on the structural rheology in diblock copolymers (*),
      Soft Matter (submitted).

    • M. Tarama, Y. Itino, A. Menzel and T. Ohta,
      Individual and collective dynamics of self-propelled soft particles(*),
      Euro. Phys. J. (submitted).